Ribosomal RNA

Biological terminology
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synonym rRNA (rRNA) generally refers to ribosomal RNA
Ribosomal RNA, or rRNA, is the most abundant type in cells RNA , which is also a class 3 RNA( tRNA mRNA , rRNA) relative molecular mass The largest class of RNA, which is related to protein Formed by combination ribosome , whose function is to translate amino acid Composed as Peptide chain [1] (The peptide chain is coiled and folded into protein under the action of endoplasmic reticulum and Golgi matrix, prokaryote Complete in cytoplasm). RRNA accounts for about 82% of the total RNA. RRNA does not perform its function when it exists alone. It combines with a variety of proteins to form ribosomes, serving as the "assembly machine" for protein biosynthesis. The molecular weight of rRNA is large and its structure is quite complex. Although many primary structures of rRNA molecules have been measured, the study of their secondary and tertiary structures and functions needs to be further deepened.
Chinese name
Ribosomal RNA
Foreign name
Ribosomal RNA
Abbreviation
rRNA
Features
A ribozyme
Role
Combine with protein to form ribosome

classification

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prokaryote There are three types of rRNAs for RNA: 5SrRNA, 16SrRNA and 23SrRNA.
Eukaryote There are four types of rRNAs in the gene expression system: 5SrRNA, 5.8SrRNA, 18SrRNA and 28SrRNA.
S is Macromolecular substances A physical unit in ultracentrifugation sedimentation, which can indirectly reflect the size of molecular weight. prokaryote And eukaryotic ribosomes are both large and small Subunit form.
RRNA structure [2]
Ribosomal RNA
Four types in human genome RRNA gene 18S, 5.8S and 28S rRNA genes are connected in series, and each gene is Bay area Separated, 5S rRNA gene is encoded on another chromosome.

characteristic

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Ribosomal RNA has its own characteristics in various organisms, so it can be concluded from the comparison of rRNAs in different organisms that Biological evolution Conclusion of the course.
RRNA is Peptidyltransferase (peptidyl transfer) Peptide bond No extra energy is required for formation.
In the past, it was believed that proteins with large subunits had enzymatic activity, which promoted the formation of peptide bonds, so they were called transpeptidases. In the early 1990s, H.F. Noller and others proved that Escherichia coli 23SrRNA can catalyze the formation of peptide bonds, which proves that ribosome is a ribozyme Thus fundamentally changing the traditional view. Ribosomes catalyze peptide bond synthesis of rRNA, while proteins only maintain rRNA conformation and play an auxiliary role.

form

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RRNA generally Ribosomal protein Combine to form ribosome If the rRNA is removed from the ribosome, the ribosome structure will collapse. prokaryote There are 5S, 16S and 23S rRNAs in the ribosomes of. S is Settlement coefficient (segmentation coefficient), when used Ultracentrifugation When measuring the precipitation speed of a particle, this speed is proportional to the size and diameter of the particle. 5S contains 120 nucleotide 16S contains 1540 nucleotides, and 23S contains 2900 nucleotides. Eukaryotes have four kinds of rRNAs, with molecular sizes of 5S, 5.8S, 18S and 28S, and about 120, 160, 1900 and 4700 nucleotides, respectively.
RRNA is a single strand, which contains unequal amounts of A and U, G and C, but has a wide range of Double chain Area. In the double stranded region, alkali gene hydrogen bond Connected, expressed as a hairpin spiral.
RRNA in protein synthesis The functions in are not fully understood. However, there is a section at rRNA3 'end of 16S nucleotide sequence MRNA Preamble sequence They are complementary, which may help the combination of mRNA and ribosome.

structure

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Figure 1 Ribosomal RNA
The main methods to determine the spatial arrangement of rRNA are electron microscopy and cross-linking. Its functional site is determined by several methods. The binding site and direction of rRNA molecules are shown in 70S ribosome Figure 1. Under electron microscope, the arrangement of 16SrRNA was V-shaped, and one arm was slightly thicker and longer than the other. The size and shape of the 23S can match the 50S "Crown" style very well. It is concluded that rRNA formed Ribosomal subunit And protein binding. In general, the rRNA skeleton does not undergo major conformational changes. use Immunoelectron microscopy Certain characteristics of rRNA within subunits have been identified. Using antibodies against N6,6-dimethyladenosine (located at positions 24 and 25 of the 'end of 16SrRNA3'), it was determined that the modified base region (about 25 bases of the 'end of 16SrRNA3') was located between the head and body of the 30S subunit. The m7G at position 526 of 16SrRNA is at the junction of upper 1/3 and lower 2/3 of 30S. The internal cross-linking of 16S, 5S and 23SrRNA has been studied. It is proved that G41 and G72 are crosslinked in 5SrRNA, which belongs to the tertiary structure reaction. Using this reaction, an improved three-dimensional model of 5SrRNA molecule has been constructed. In addition, RNA protein cross-linking is also a very useful method to determine the spatial arrangement of rRNA molecules within subunits.
It is generally believed that the basic function of ribosome depends on its rRNA, and ribosomal proteins play a role in strengthening the function of rRNA. Ribosomes were originally constructed from rRNA, and some proteins were added to them during evolution. Experiments in vivo and in vitro have proved that ribose lacking certain proteins still exists biological activity In addition, rRNA gene (rDNA) mutation and methylation can cause antibiotics (such as erythromycin chloramphenicol )Resistance.

function

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In ribosomes, rRNA is the main structural component, the core of structure and function, and its main functions are:
(1) It has peptidyltransferase activity.
(2) It provides a binding site for tRNA.
(3) It provides binding sites for a variety of protein synthesis factors.
(4) At the beginning of protein synthesis, it participates in selective binding with mRNA and binding with mRNA in the extension of peptide chain.
(5) In addition, the binding of ribosome size subunits, correction reading, correction of nonsense chain or frame drift, and the role of antibiotics are all related to rRNA.