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共表达簇以下为:C266型

来自FANTOM5_SSTAR

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全名:C266_acute_chronic_leukemia_small_绒毛膜癌_hepatoma_st



第一阶段CAGE峰值

Hg19::chr10:126826943..126826984-第28页@CTBP2
Hg19::chr10:127505042..127505063-第8页@UROS
Hg19::chr10:25820836..25820845+电话:chr10:25820836..25820845
+
Hg19::chr10:25820884..25820895+电话:chr10:25820884..25820895
+
Hg19::chr10:25820904..25820913+电话:chr10:25820904..25820913
+
Hg19::chr10:25821044..25821091+电话:chr10:25821044..25821091
+
Hg19::chr11:33914678..33914683-电话:chr11:33914678..33914683
-
Hg19::chr11:74807933..74807937-电话:chr11:74807933..74807937
-
Hg19::chr12:115758751..115758760-电话:chr12:115758751..115758760
-
Hg19::chr12:115758858..115758876-电话:chr12:115758858..115758876
-
Hg19::chr12:115758891..115758908-电话:chr12:115758891..115758908
-
Hg19::chr12:71617078..71617086-电话:chr12:71617078..71617086
-
Hg19::chr12:78870953..78870955+电话:chr12:78870953..78870955
+
Hg19::chr14:105166013..105166017+电话:chr14:105166013..105166017
+
Hg19::chr14:67859531..67859537-第9页@PLEK2
Hg19::chr16:24124312..24124336+电话:chr16:24124312..24124336
+
Hg19::chr16:24127820..24127835-p@chr16:24127820..24127835
-
Hg19::chr16:88558406..88558427+电话:chr16:88558406..88558427
+
Hg19::chr16:88858526..88858538-电话:chr16:88858526..88858538
-
Hg19::chr17:25899255..25899265+电话:chr17:25899255..25899265
+
Hg19::chr17:72864739..72864767-第5页@FDXR
Hg19::chr18:31319109..31319114+第9页@ASXL3
Hg19::chr18:43620002..43620017-电话:chr18:43620002..43620017
-
Hg19::chr19:51105300..51105305+电话:chr19:51105300..51105305
+
Hg19::chr19:5131212..5131221+第4页@KDM4B
Hg19::chr19:5131887..5131896+电话:chr19:5131887..5131896
+
Hg19::chr19:59067834..59067852-电话:chr19:59067834..59067852
-
Hg19::chr1:159253361..159253368+电话:chr1:159253361..159253368
+
Hg19::chr1:176849256..176849268+电话:chr1:176849256..176849268
+
Hg19::chr1:179011968..179011976-电话:chr1:179011968..179011976
-
Hg19::chr22:36007795..36007820-电话:chr22:36007795..36007820
-
Hg19::chr2:219258788..21925883+电话:chr2:219258788..219258830
+
Hg19::chr2:220386017..220386029+电话:chr2:220386017..220386029
+
Hg19::chr2:225249514..225249517-电话:chr2:225249514..225249517
-
Hg19::chr2:5211564..5211614+电话:chr2:5211564..5211614
+
Hg19::chr3:139059704..139059754-电话:chr3:139059704..139059754
-
Hg19::chr3:50211282..50211296+p@chr3:50211282.50211296
+
Hg19::chr3:52334122..52334129-p@chr3:52334122..52334129
-
Hg19::chr3:52334165..52334173-电话:chr3:52334165..52334173
-
Hg19::chr4:124087446..124087458+电话:chr4:124087446..124087458
+
Hg19::chr4:134160987..134160994-电话:chr4:134160987..134160994
-
Hg19::chr4:171901111..171901116+电话:chr4:171901111..171901116
+
Hg19::chr5:1201575..1201595+p3@SLC6A19
Hg19::chr5:1201599..1201625+p2@SLC6A19
Hg19::chr6:31615512..31615544-电话:chr6:31615512..31615544
-
Hg19::chr6:42072634..42072643-p13@C6或132
Hg19::chrX:11327532..11327554-邮政编码:11327532..11327554
-
Hg19::chrX:48559008..48559045-电话:48559008..48559045
-
Hg19::chrX:48650688..48650735+第5页@GATA1


此共表达簇上的丰富路径<b>摘要:典型路径基因集是从Reactome、Wikipathys和KEGG中编译而来的。对于主要的信号通路,转录调控基因(下游靶点)是从Netpath获得的。综合起来,典型途径和下游靶点总计489个人类基因集。利用同源基因数据库通过同源性推断出相应的小家鼠基因集。通过超几何概率评估共表达簇中包括的489个经典途径和基因集中的每一个的富集度。然后,采用Benjamini-Hochberg方法对所得P值进行调整,以进行多重比较<br><b>分析师:Emmanuel Dimont链接到源数据集数据


此共表达无结果

此共表达簇上的丰富基因本体术语<b>摘要:共表达簇的GOStat分析结果。使用GOStat(PMID:14962934)和默认参数对启动子映射到至少两个不同基因的每个簇进行分析<br><b>分析师:Erik Arner链接到源数据集数据


GO标识GO名称FDR校正的p值
GO:0016730号氧化还原酶活性,作为供体作用于铁硫蛋白0.00715294948781349
去:0004324铁氧还蛋白NADP+还原酶活性0.00715294948781349
去:0008937铁氧还蛋白还原酶活性0.00715294948781349
GO:0016731号氧化还原酶活性,作为供体作用于铁硫蛋白,作为受体作用于NAD或NADP0.00715294948781349
GO:0046502号尿卟啉原III代谢过程0.00953656411554144
去:0006780尿卟啉原III生物合成过程0.00953656411554144
去:0004852尿卟啉原-III合成酶活性0.0163459895047015
GO:0015804号中性氨基酸转运0.0485828177802072
去:0006783血红素生物合成过程0.0485828177802072
GO:0015175号中性氨基酸跨膜转运活性0.0485828177802072



此共同表达集群上的丰富示例本体术语<b>摘要:</b>为了总结1000个样本中的启动子活性(TSS区域的表达谱),我们基于FANTOM5样本本体(FF本体)进行了富集分析。这里的问题是“在哪种类型的样本中启动子更活跃”。为了回答这个问题,我们使用Mann-Whitney秩和检验比较了与样本本体术语相关的样本和其余样本中的表达式(TPM)。为了总结在这个共表达集群中丰富的本体,我们对组成的所有启动子的平均表达谱进行了相同的分析<b> 分析师:Hideya Kawaji链接到源数据集疾病数据<br>


疾病
本体术语p值n个
髓系白血病2008年7月41日31


此共表达簇上过度表达的TFBS(DNA)基序<b>摘要:</b>显示的值是该共表达簇中基序过度表达的p值。因此,较小的p值意味着强烈的过度代表性<b> 分析师:Michiel de Hoon链接到源数据数据<br><br>茉莉花图案<br>数据


新颖的图案



JASPAR图案

Motifs公司-log10(p值)
MA0003.1号机组0.111394
MA0004.1号机组0.0321488
MA0006.1号机组0.00619213
MA0007.1号机组0.516216
MA0009.1号机组0.263756
MA0014.1号9.83564电子05
MA0017.1号0.487315
MA0019.1号0.0819566
MA0024.1号机组0.193834
MA0025.1号文件0.3631
MA0027.1号机组1.74826
MA0028.1号机组0.239827
MA0029.1号机组1.12232
MA0030.1型0.198787
MA0031.1号文件0.15963
电话0038.10.228762
MA0040.1型0.209871
MA0041.1号0.0369855
MA0042.1号0.0289066
MA0043.1号0.263979
MA0046.1号0.256123
MA0048.1号0.0627077
马0050.10.0291141
MA0051.1号0.224229
MA0052.1号0.609377
MA0055.1号0.101147
马0056.10
MA0057.1号0.162473
MA0058.1号0.0134788
MA0059.1号0.013294
马0060.10.720202
MA0061.1号0.392691
MA0063.1号0
MA0066.1号2.36099
MA0067.1号0.514146
MA0068.1号0.151529
马0069.10.253439
MA0070.1号1.27393
MA0071.1号3.31611
MA0072.1号1.26233
MA0073.1号0.00846835
MA0074.1号0.223426
MA0076.1号0.919936
MA0077.1号0.6681
MA0078.1号0.340465
MA0081.1号0.0634322
MA0083.1号0.269067
MA0084.1号0.679402
MA0087.1号0.240948
MA0088.1号0.181032
马0089.10
MA0090.1号0.0824972
MA0091.1号机组0.0328063
MA0092.1号0.103168
MA0093.1号0.00645236
马0095.10
马0098.10
MA0100.1型0.522734
MA0101.1号机组0.104492
MA0103.1号0.195176
MA0105.1号0.0397821
MA0106.1号0.0803211
MA0107.1号0.109939
MA0108.2号0.477395
MA0109.1号0
MA0111.1号0.228735
MA0113.1号0.0873401
MA0114.1号0.0126519
MA0115.1号0.449785
MA0116.1号0.368435
MA0117.1号0.290704
马0119.11.46638
MA0122.1号机组0.833799
MA0124.1号机组0.415762
MA0125.1号机组0.349207
MA0130.1号机组0
马0131.10.113217
MA0132.1号机组0
MA0133.1号机组0
MA0135.1号机组1.42091
MA0136.1号机组0.236422
MA0139.1号0.495226
MA0140.1号机组3.9567
MA0141.1号8.90482
MA0142.1号0.860025
MA0143.1号0.613856
MA0144.1号机组0.0871497
MA0145.1号0.060301
MA0146.1号0.0447471
MA0147.1号0.0152484
MA0148.1号0.350475
MA0149.1号2.60366
MA0062.2号0.240243
MA0035.2号3.94993
MA0039.2号0.00770712
MA0138.2号机组0.342023
MA0002.2号机组1.41774
马0137.20.00830828
MA0104.2号0.0055454
MA0047.2号0.261058
MA0112.2号1.65992
MA0065.2号0.16838
MA0150.1号机组0.644059
MA0151.1号0
MA0152.1号0.1926
MA0153.1号机组0.336269
MA0154.1号机组0.853625
MA0155.1号0.176093
MA0156.1号机组0.256234
MA0157.1号0.39953
MA0158.1号0
MA0159.1号机组2.1494
MA0160.1号1.04202
MA0161.1号机组0
MA0162.1号机组0.015859
MA0163.1号机组0.0853647
MA0164.1号机组0.309505
MA0080.2号0.871864
马0018.20.581793
MA0099.2号机组1.15075
MA0079.2号2017年6月3日-05日
MA0102.2号机组0.713248
马0258.12.12315
马0259.10.0559863
马0442.10



ENCODE TF ChIP-seq峰富集分析<b>摘要:</b>对于每个TF和每个共表达簇,使用Fisher精确检验将带有ENCODE TF ChIP信号的启动子数量与稳健集的其他启动子进行比较。Benjamini-Hochberg校正后,保留了ChIP显著富集(q<=0.05)的聚类<br><b>分析师:Erik Arner链接到源数据集数据


(#promoters=该共表达簇中具有TF的ChIP信号的启动子数量)

TF公司#发起人丰富p值q值
GATA1#2623133.597632772845023.96023418025606e-050.000738576602771004
GATA2#2624123.121207771482610.0003188913615455430.00326452606434571
STAT2#677345.327654790729850.006739339895501240.0286432230230844
TAL1号6886127.314763267944545.70523040920804e-083.56795544136095e-06



共表达簇的相对表达<b>总结:</b>将共表达簇与FANTOM5样本进行比较,以获得相对表达<br><b>分析师:不适用<br><br>链接到数据源数据