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完整id:C185_small_adrenal_actric_Mesenchymal_actute_HES3GFP_testis



第一阶段CAGE峰值

Hg19:：chr10:121863383..121863387-电话：10:121863383.121863387
-
Hg19:：chr10:121863435..121863446-电话：chr10:121863435..121863446
-
Hg19:：chr10:133457602..133457623+电话：chr10:133457602..133457623
+
Hg19:：chr10:36850273..36850276-电话：chr10:36850273..36850276
-
Hg19:：chr10:66459172..66459188-电话：chr10:66459172..66459188
-
Hg19:：chr10:67571401..67571408-电话：chr10:67571401..67571408
-
Hg19:：chr11:102647098..102647117-电话：chr11:102647098..102647117
-
Hg19:：chr11:31093041..31093047-电话：chr11:31093041..31093047
-
Hg19:：chr11:31171048..31171052+电话：chr11:31171048..31171052
+
Hg19:：chr11:31391345..31391358+第3页@DNAJC24
Hg19:：chr11:31832461..31832468-第20页@PAX6
Hg19:：chr11:67351250..67351261+第2页@GSTP1
Hg19:：chr11:68519026.第68519037页-p5@MTL5
Hg19:：chr11:76973897.76973898-电话：chr11:76973897…76973898
-
Hg19:：chr12:88178319..88178329-p2@MKRN9P
Hg19:：chr13:104517168..104517170+电话：chr13:104517168..104517170
+
Hg19:：chr13:92569013..92569022-电话：chr13:92569013..92569022
-
Hg19:：chr13:92571088..92571098-p@chr13:92571088..92571098
-
Hg19:：chr13:92571252..92571265-电话：chr13:92571252..92571265
-
Hg19:：chr15:36739964..3673979-电话：chr15:36739964..3673979
-
Hg19:：chr15:96903700..96903704+电话：chr15:96903700..96903704
+
Hg19:：chr15:96959907..96959930+电话：chr15:96959907…96959930
+
Hg19:：chr15:97503439..97503472+电话：chr15:97503439…97503472
+
Hg19:：chr15:97554594..97554599-电话：chr15:97554594..97554599
-
Hg19:：chr15:97777487..97777525+电话：chr15:97777487..97777525
+
Hg19:：chr15:97779038..97779056+电话：chr15:97779038..97779056
+
Hg19:：chr16:84424157..84424178-电话：chr16:84424157..84424178
-
Hg19:：chr17:58979826..58979836+电话：chr17:58979826..58979836
+
Hg19:：chr1:47881953..47881958+p1@福克斯3
Hg19:：chr1:63789403..63789435-p1@ENST00000431294
Hg19:：chr1:81686906..81686911+电话：chr1:81686906..81686911
+
Hg19:：chr1:81771995..81772012+p4@LPHN2
Hg19:：chr1:81772013..81772038+p10@LPHN2
Hg19:：chr1:81772072..81772104+p3@LPHN2
Hg19:：chr1:81772113..81772122+第17页@LPHN2
Hg19:：chr20:50722573..50722580-第18页@ZFP64
Hg19:：chr20:52871134..52871139-电话：chr20:52871134..52871139
-
Hg19:：chr21:16662950..16662957-p@chr21:16662950..16662957
-
Hg19:：chr21:26144899..26144920-p@基督21:26144899..26144920
-
Hg19:：chr21:26151976..26151979+电话：chr21:26151976..26151979
+
Hg19:：chr2:189756256..189756260+电话：chr2:189756256..189756260
+
Hg19:：chr2:200324103..200324118-电话：chr2:20032403..200324118
-
Hg19:：chr3:102157364..102157394+电话：chr3:102157364..102157394
+
Hg19:：chr3:177715091..177715094+电话：chr3:177715091..177715094
+
Hg19:：chr3:78334430..78334433-电话：chr3:78334430..78334433
-
Hg19:：chr3:78360347..78360353+电话：chr3:78360347..78360353
+
Hg19:：chr3:78360522..78360543+电话：chr3:78360522..78360543
+
Hg19:：chr3:78666867..78666875-第43页@ROBO1
Hg19:：chr3:78684981..78684990-电话：chr3:78684981..78684990
-
Hg19:：chr3:78685050..78685061-电话：chr3:78685050..78685061
-
Hg19:：chr3:86289712..86289720+电话：chr3:86289712..86289720
+
Hg19:：chr3:86701885..86701893-电话：chr3:86701885..86701893
-
Hg19:：chr3:86701902..86701920-电话：chr3:86701902..86701920
-
Hg19:：chr3:86701921..86701925-电话：chr3:86701921..86701925
-
Hg19:：chr3:86703134..86703137-电话：chr3:86703134..86703137
-
Hg19:：chr3:86703154..86703166-p@chr3:86703154..86703166
-
Hg19:：chr3:86703174..86703181-电话：chr3:86703174..86703181
-
Hg19:：chr4:145430439..145430458-电话：chr4:145430439..145430458
-
Hg19:：chr4:157516018..157516023+电话：chr4:157516018.157516023
+
Hg19:：chr4:160188990..160189002+第16页@RAPGEF2
Hg19:：chr4:160189041..160189050+第37页@RAPGEF2
Hg19:：chr4:160189282..160189289+第38页@RAPGEF2
Hg19:：chr4:183370111..183370118+第12页@ODZ3
Hg19:：chr4:20482109..20482123+电话：chr4:20482109..20482123
+
Hg19:：chr5:103559627..103559633-电话：chr5:103559627..103559633
-
Hg19:：chr5:103559757..103559775+电话：chr5:103559757..103559775
+
Hg19:：chr5:124228937..124228942+电话：chr5:124228937..124228942
+
Hg19:：chr5:50262633..50262637+电话：chr5:50262633..50262637
+
Hg19:：chr5:80703757..80703760-p1@AK054959
Hg19:：chr5:91378410..91378419+p1@ENST00000507217
Hg19:：chr6:10074344..10074351-电话：chr6:10074344..10074351
-
Hg19:：chr6:121655552..121655592-p4@C6或170
Hg19:：chr6:122403849..122403854-电话：chr6:122403849..122403854
-
Hg19:：chr6:122720681..122720713+p3@HSF2
Hg19:：chr6:129513919..129513922+电话：chr6:129513919..129513922
+
Hg19:：chr6:140771120..140771128+p@chr6:140771120..140771128
+
Hg19:：chr6:141460346..141460355+p@chr6:141460346.141460355
+
Hg19:：chr6:141715304..141715307+电话：chr6:141715304..141715307
+
Hg19:：chr6:64762702..64762707+电话：chr6:64762702..64762707
+
Hg19:：chr7:84390545..84390550+电话：chr7:84390545..84390550
+
Hg19:：chr7:84651769..84651772-电话：chr7:84651769..84651772
-
Hg19:：chr7:84651785..84651813-电话：chr7:84651785..84651813
-
Hg19:：chr7:84651827..84651832-电话：chr7:84651827..84651832
-
Hg19:：chr7:85204085..85204091+电话：chr7:85204085..85204091
+
Hg19:：chr8:116215298..116215305+电话：chr8:116215298..116215305
+
Hg19:：chr8:116215335..116215378+电话：chr8:116215335..116215378
+
Hg19:：chr8:116215608..116215615+电话：chr8:116215608..116215615
+
Hg19:：chr8:116342361..116342367-电话：chr8:116342361..116342367
-
Hg19:：chr8:39626720..39626725-电话：chr8:39626720..39626725
-
Hg19:：chr8:39626962..39626971-电话：chr8:39626962..39626971
-
Hg19:：chr8:72268870..72268881-第14页@EYA1
Hg19:：chr8:72275738..72275747-电话：chr8:72275738…72275747
-


此共表达簇上的丰富路径<b>摘要：典型路径基因集是从Reactome、Wikipathys和KEGG中编译而来的。对于主要的信号通路，转录调控基因（下游靶点）是从Netpath获得的。综合起来，典型途径和下游靶点总计489个人类基因集。利用同源基因数据库通过同源性推断出相应的小家鼠基因集。通过超几何概率评估共表达簇中包括的489个经典途径和基因集中的每一个的富集度。然后，采用Benjamini-Hochberg方法对所得P值进行调整，以进行多重比较<br><b>分析师：Emmanuel Dimont链接到源数据集数据

此共表达无结果

此共表达簇上的丰富基因本体术语<b>摘要：共表达簇的GOStat分析结果。使用GOStat（PMID:14962934）和默认参数对启动子映射到至少两个不同基因的每个簇进行分析<br><b>分析师：Erik Arner链接到源数据集数据

GO标识GO名称FDR校正的p值
GO:0050789号生物过程调节0.000458795039529669
去：0065007生物调节0.000553884666389028
去：0050794细胞过程的调节0.00127516109800752
GO:0048468号细胞发育0.00278361111199754
去：0007275多细胞生物发育0.00332281962766397
去：0050767神经发生的调节0.0035795823346943
GO:0001654号眼睛发育0.00470965243789605
GO:0048869号细胞发育过程0.00737243277292247
GO:0030154编号细胞分化0.00737243277292247
GO:0021902号神经元细胞与前脑特定类型神经元的结合0.00850905713084782
GO:0021877号前脑神经元命运承诺0.00850905713084782
GO:0048856号解剖结构发育0.00850905713084782
去：0007423感觉器官发育0.00850905713084782
去：0032502发展过程0.00923177719143751
GO:0021879号前脑神经元分化0.00923177719143751
GO:0021872号前脑神经元的生成0.00923177719143751
去：0007435唾液腺形态发生0.00923177719143751
GO:0021798号前脑背侧/腹侧模式形成0.00923177719143751
GO:0022612号腺体形态发生0.00923177719143751
GO:0017034号Rap鸟苷酸-核苷酸交换因子活性0.00923177719143751
去：0007409轴突发生0.00923177719143751
电话：0048667分化过程中的神经元形态发生0.00933276653822271
GO:0048812号神经突形态发生0.00933276653822271
GO:0000904号分化过程中的细胞形态发生0.00985299067544778
去：0031175神经突起发育0.0101773567457619
去：0032501多细胞生物过程0.0101773567457619
去：0008046轴突导向受体活性0.0101773567457619
GO:0046582号Rap GTPase激活剂活性0.0101773567457619
去：0006366RNA聚合酶II启动子转录0.011727456069104
GO:0048666号神经元发育0.011727456069104
GO:0021871号前脑区域化0.0118716606358403
去：0007431唾液腺发育0.0118716606358403
去：0005099Ras GTPase激活剂活性0.0122177020141659
去：0006916抗凋亡0.0125778489838491
去：0009950背/腹轴规格0.0131602684796476
去：0007399神经系统发育0.0131602684796476
GO:0048731号系统开发0.0131602684796476
GO:0042462号眼感光细胞发育0.0149346592481628
去：0032990细胞部分形态发生0.0149346592481628
GO:0048858号细胞投射形态发生0.0149346592481628
通过：0030030细胞投射组织与生物发生0.0149346592481628
去：0030182神经元分化0.015102049704423
GO:0021543编号大脑皮层发育0.015102049704423
GO:0001754号眼睛感光细胞分化0.015102049704423
电话：0043066细胞凋亡的负调控0.0161421034391648
去：0035272外分泌系统发育0.0161421034391648
GO:0042461号感光细胞发育0.0161421034391648
GO:0043069号程序性细胞死亡的负调控0.0161421034391648
去：0007417中枢神经系统发育0.0162980930955047
去：0050793发育过程的调控0.0162980930955047
GO:0043565号序列特异性DNA结合0.0164439799615083
GO:0048699号神经元的产生0.0164605709819633
GO:0046530号感光细胞分化0.0179020907923902
GO:0022008年神经发生0.0183074205057291
GO:0045665号神经元分化的负调控0.0183074205057291
GO:0021983年垂体发育0.0183074205057291
转到：0021537端脑发育0.0183074205057291
去：0006355转录调控，依赖于DNA0.0190480001083401
GO:0021536号间脑发育0.0192916008186325
去：0006351转录，依赖于DNA0.0199047474675831
去：0050772轴突发生的正调控0.0199047474675831
去：0032774RNA生物合成过程0.0199047474675831
GO:0048663号神经元命运承诺0.0210710382746756
去：0009653解剖结构形态发生0.0219125386674463
GO:0048518号生物过程的正向调节0.0224492872519066
去：0050769神经发生的正调控0.0229791480795575
GO:0044464号电池部件0.0233525963137908
GO:0045449号转录调控0.0234749276947601
去：0050679上皮细胞增殖的正调控0.0240942342010499
去：0009798轴规格0.0240942342010499
GO:0019219号碱基、核苷、核苷酸和核酸代谢过程的调控0.0240942342010499
去：0005096GTPase激活剂活性0.0241081661902053
GO:0048523号细胞过程的负调控0.0241679586233096
转到：0006350转录0.0256288381954396
GO:0010468号基因表达调控0.0258485786045045
GO:0048519号生物过程的负调控0.0258485786045045
GO:0016524号拉曲毒素受体活性0.0280803840498099
GO:0031323号细胞代谢过程的调控0.0280803840498099
GO:0048592号眼睛形态发生0.0303769023797294
去：0050770轴突发生的调控0.0303769023797294
电话：0045664神经元分化的调控0.0303769023797294
GO:0009953号背/腹模式形成0.0323041873562411
GO:0001709号细胞命运测定0.0325385148482621
GO:0019222号代谢过程的调节0.0325385148482621
GO:0016070编号RNA代谢过程0.0325385148482621
去：0050678上皮细胞增殖的调控0.0329911108977165
去：0008047酶激活剂活性0.0334215169677321
去：0005634核0.0334734779530575
GO:0042127号细胞增殖的调节0.0334734779530575
去：0050673上皮细胞增殖0.0334734779530575
去：0035270内分泌系统发育0.0334734779530575
去：0005083小GTPase调节器活性0.0334734779530575
GO:0051056号小GTPase介导的信号转导调控0.0334734779530575
去：0032989细胞结构形态发生0.0334734779530575
去：0000902形态建成0.0334734779530575
GO:0043010号摄像式眼睛显影0.0334734779530575
转到：0010038金属离子响应0.0340972399188216
GO:0001764号神经元迁移0.0347079612198184
通过：0003700转录因子活性0.0379919379612352
GO:001035编号对无机物的反应0.0396442858100663
去：0004364谷胱甘肽转移酶活性0.0411076048687229
去：0030900前脑发育0.0421280201981221
GO:0048732号腺体发育0.0421280201981221
GO:0042981号细胞凋亡的调节0.0429185461111705
GO:0043067号细胞程序性死亡的调控0.0433592482113674
GO:0042221号对化学刺激的反应0.0447982881686363
去：0009952前/后模式形成0.0484169636769364
去：0007411轴突导向0.0488329231328653



此共同表达集群上的丰富示例本体术语<b>摘要：</b>为了总结1000个样本中的启动子活性（TSS区域的表达谱），我们基于FANTOM5样本本体（FF本体）进行了富集分析。这里的问题是“在哪种类型的样本中启动子更活跃”。为了回答这个问题，我们使用Mann-Whitney秩和检验比较了与样本本体术语相关的样本和其余样本中的表达式（TPM）。为了总结在这个共表达集群中丰富的本体，我们对组成的所有启动子的平均表达谱进行了相同的分析<b> 分析师：Hideya Kawaji链接到源数据集单元格_数据<br>uberon_data（超级数据）<br>疾病数据<br>

单元格类型
本体术语p值n个
肺上皮细胞6.95e-12号19
优步解剖
本体术语p值n个
呼吸道上皮6.95e-12号19
肺上皮6.95e-12号19
肺1.80至1022
呼吸管1.80至1022
呼吸器官1.80至1022
双肺1.80至1022
肺原基1.80至1022
肺芽1.80至1022
呼吸系统上皮1.52e-08年28
胸腔元件2.74e-07日34
胸腔2.74e-07日34
胸段器官4.03e-07日35
上皮芽2007年8月1日37
疾病
本体术语p值n个
肺小细胞癌3.10电子-504
支气管癌1.78e-29页7
支气管癌1.78e-29页7
肺癌2.62e-23页9
肺癌1.22e-1415
呼吸系统癌2014年8月2日16


此共表达簇上过度表达的TFBS（DNA）基序<b>摘要：</b>显示的值是该共表达簇中基序过度表达的p值。因此，较小的p值意味着强烈的过度代表性<b> 分析师：Michiel de Hoon链接到源数据数据<br><br>茉莉花图案<br>数据

新颖的图案



JASPAR图案

Motifs公司-log10（p值）
MA0003.1号机组6.73799e-08年
MA0004.1号机组0.258119
MA0006.1号机组0.0188876
MA0007.1号机组0.222863
MA0009.1号机组0.361827
MA0014.1号5.12741e-07号
MA0017.1号0.251147
MA0019.1号0.375902
MA0024.1号机组0.068993
MA0025.1号文件0.183196
MA0027.1号机组1.47809
MA0028.1号机组0.113979
MA0029.1号机组0.263395
MA0030.1型0.913628
MA0031.1号文件1.13087
电话0038.11.43522
MA0040.1型1.98297
MA0041.1号0.47849
MA0042.1号0.585011
MA0043.1号0.112621
MA0046.1号0.107435
MA0048.1号0.0518
马0050.10.122838
MA0051.1号0.743214
MA0052.1号0.576807
MA0055.1号0.518243
马0056.10
MA0057.1号0.00155878
MA0058.1号0.106926
MA0059.1号0.10538
马0060.18.33684
MA0061.1号0.0041424
MA0063.1号0
MA0066.1号0.0524547
MA0067.1号0.821067
MA0068.1号0.00271871
马0069.10.105679
MA0070.1号0.677051
MA0071.1号0.0368616
MA0072.1号0.325241
MA0073.1号0.00490845
MA0074.1号0.281682
MA0076.1号0.227148
MA0077.1号2.18872
MA0078.1号1.13094
MA0081.1号0.192975
MA0083.1号1.78662
MA0084.1号0.448027
MA0087.1号1.62259
MA0088.1号0.0194169
马0089.10
MA0090.1号0.407981
MA0091.1号机组0.263265
MA0092.1号0.507015
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ENCODE TF ChIP-seq峰富集分析<b>摘要：</b>对于每个TF和每个共表达簇，使用Fisher精确检验将带有ENCODE TF ChIP信号的启动子数量与稳健集的其他启动子进行比较。Benjamini-Hochberg校正后，保留了ChIP显著富集（q<=0.05）的聚类<br><b>分析师：Erik Arner链接到源数据集数据

（#promoters=该共表达簇中具有TF的ChIP信号的启动子数量）

TF公司#发起人丰富p值q值
CTBP2号148864.090239152564880.003634225134924690.0183723722767994



共表达簇的相对表达<b>总结：</b>将共表达簇与FANTOM5样本进行比较，以获得相对表达<br><b>分析师：不适用<br><br>链接到数据源数据

检索自“http://f5-webapp4.gsc.riken.jp/resource_browser/index.php？title=共表达集群：C185&oldid=3067303"