个人工具

共表达簇以下为:148元

来自FANTOM5_SSTAR

跳转到:航行,搜索


完整id:C148_kidne_small_epidymis_pancreas_serou_duodenum_temoral



第一阶段CAGE峰值

Hg19::chr10:17171785..17171816-p1@古巴比索
Hg19::chr10:17171817..17171829-第3页@CUBN
Hg19::chr10:17171832..17171835-第7页@CUBN
Hg19::克时10:17171871.17171882-第4页@CUBN
Hg19::chr10:45406779..45406811+第1页@TMEM72
Hg19::chr10:45406822..45406831+第6页@TMEM72
Hg19::chr10:45406850..45406891+第2页@TMEM72
Hg19::chr10:45406899..45406917+第5页@TMEM72
Hg19::chr10:54725058..54725064-电话:chr10:54725058..54725064
-
Hg19::chr11:45943169..45943198+2@GYLTL1B
Hg19::chr11:58710802..58710822+第4页@GLYATL1
Hg19::chr11:66634017..66634026-电话:chr11:66634017..66634026
-
Hg19::chr11:66634028..66634039-p@chr11:66634028..66634039
-
Hg19::chr12:101604010..101604021-p1@SLC5A8
Hg19::chr12:49394840..49394845-电话:chr12:49394840..49394845
-
Hg19::chr12:50366724..50366735+p2@空气质量6
Hg19::chr12:72668682..72668691-p1@ENST00000552396
Hg19::chr13:42976000..42976034+电话:chr13:42976000…42976034
+
Hg19::chr13:44023202..44023209-电话:chr13:44023202..44023209
-
Hg19::chr13:60162219..60162241-电话:chr13:60162219..60162241
-
Hg19::chr14:64331100..64331111+p18@同步2
Hg19::chr14:76777051..76777061+第2页@ESRRB
Hg19::chr15:33442763..3342799-电话:chr15:33442763..33442799
-
Hg19::chr15:35806202..35806210-电话:chr15:35806202..35806210
-
Hg19::chr15:54129731..54129740+电话:chr15:54129731..54129740
+
Hg19::克时15:54129795.54129813+电话:chr15:5412995..54129813
+
Hg19::chr15:54129815..54129824+电话:chr15:54129815..54129824
+
Hg19::chr15:58790059..58790070-第19页@ALDH1A2
Hg19::chr15:69854732.69854737+p@chr15:69854732..69854737
+
Hg19::chr15:72447481..72447494+电话:chr15:72447481..72447494
+
Hg19::chr15:72447905..72447946+电话:chr15:72447905..72447946
+
Hg19::chr15:72448034..72448041+电话:chr15:72448034…72448041
+
Hg19::chr15:74504560..74504574-电话:chr15:74504560…74504574
-
Hg19::chr15:74504597..74504602-电话:chr15:74504597..74504602
-
Hg19::chr15:96415419..96415424-电话:chr15:96415419…96415424
-
Hg19::chr15:99857689..99857711+电话:chr15:99857689..99857711
+
Hg19::chr16:67552303..67552342+电话:chr16:67552303..67552342
+
Hg19::chr16:67552347..67552370+电话:chr16:67552347..67552370
+
Hg19::chr16:67562327..67562332-电话:chr16:67562327..67562332
-
Hg19::chr16:7101842..7101875+电话:chr16:7101842..7101875
+
Hg19::chr17:4821212716..48212739+p1@ENST00000451776
Hg19::chr18:42782953.42782960+电话:chr18:42782953..42782960
+
Hg19::chr18:42783022..42783033+电话:chr18:42783022..42783033
+
Hg19::chr18:42783125..42783139+电话:chr18:42783125..42783139
+
Hg19::chr18:558649988..55864995+电话:chr18:558649988..55864995
+
Hg19::chr19:12348371..12348386-p5@ZNF44
Hg19::chr19:36343357..36343389-p1@NPHS1
Hg19::chr19:36343399..36343419-电话:chr19:36343399..36343419
-
Hg19::chr19:407492216..40749225-第23页@AKT2
Hg19::chr1:110950539..110950551-第3页@HBXIP
Hg19::chr1:117021492..117021508-p1@ENST00000443219
Hg19::chr1:117037504..117037515-电话:chr1:117037504..117037515
-
Hg19::chr1:119911425..11991141+p1@HAO2
Hg19::chr1:16370271..16370303+p1在CLCNKB处
Hg19::chr1:16370308..16370321+第3页@CLCNKB
Hg19::chr1:171217622..171217676+第1页@FMO1
Hg19::chr1:179545059..179545089-p1@NPHS2
Hg19::chr1:204135454..204135486-p1@雷诺
Hg19::chr1:217311025..217311049-p10@紧急停堆
Hg19::chr1:45115316..45115331+p@chr1:45115316..45115331
+
Hg19::chr1:6712194..6712206-电话:chr1:6712194..6712206
-
Hg19::chr20:23992230..23992236+电话:chr20:23992230..23992236
+
Hg19::chr21:39628655..39628672+第2页@KCNJ15
Hg19::chr22:50925279..50925294+p1@MIOX
Hg19::chr2:105490797..105490801-电话:chr2:105490797..105490801
-
Hg19::chr2:105490830..105490865-电话:chr2:105490830..105490865
-
Hg19::chr2:165698497.第165698518页-第8页@COBLL1
Hg19::chr2:170199190..170199195-电话:chr2:170199190..170199195
-
Hg19::chr2:176994077..176994091+p8@HOXD8
Hg19::chr2:176994111..176994122+p10@HOXD8
Hg19::chr2:177029742..177029746-电话:chr2:177029742..177029746
-
Hg19::chr2:178179761..178179765-p1@ENST00000443132
Hg19::chr2:693025..693036+电话:chr2:693025..693036
+
Hg19::chr2:70021287..70021296-电话:chr2:70021287..70021296
-
Hg19::chr2:73143312..73143323+p6@EMX1
Hg19::chr3:154876323..154876349-电话:chr3:154876323..154876349
-
Hg19::chr3:190167571..190167577-第1页@TMEM207
Hg19::chr3:38307293..38307310+p1@SLC22A13
Hg19::chr3:38307313..38307318+p2@SLC22A13
Hg19::chr3:46919235.46919242+p11@PTH1R
Hg19::chr3:46921732..46921743+第8页@PTH1R
Hg19::chr4:114257501..114257517+p77@澳元2
Hg19::chr4:69616649..69616656-电话:chr4:69616649..69616656
-
Hg19::chr4:70465475..70465489-第2页@UGT2A1
第2页@UGT2A2
Hg19::chr4:83672072..83672077-电话:chr4:83672072..83672077
-
Hg19::chr4:86748774..86748823+第33页@ARHGAP24
Hg19::chr5:1225494..1225503+p1@SLC6A18
Hg19::chr5:149111957..149111961-电话:chr5:149111957..149111961
-
Hg19::chr5:150398982.150399013-电话:chr5:150398982..150399013
-
Hg19::chr5:15427092..15427110-电话:chr5:15427092..15427110
-
Hg19::chr5:169532896..169532904+第1页@FOXI1
Hg19::chr5:176811431..176811436+p1@SLC34A1
Hg19::chr5:31712141..31712148+p17@PDZD2
Hg19::chr5:32652119..32652129-p1@ENST00000514225
Hg19::chr5:62986485..62986495-电话:chr5:62986485..62986495
-
Hg19::chr5:72446460..72446471-p1@ENST00000508255
Hg19::chr5:72469014..72469029+第1页@TMEM174
Hg19::chr5:72469032..72469043+第2页@TMEM174
Hg19::chr6:132723168..132723179-p8@MOXD1
Hg19::chr6:132723206..132723217-电话:chr6:132723206..132723217
-
Hg19::chr6:132723297..132723305+电话:chr6:132723297..132723305
+
Hg19::chr6:25600260..25600275+电话:chr6:25600260..25600275
+
Hg19::chr6:36210772..36210775+p1@PNPLA1
Hg19::chr6:51918216..51918243-电话:chr6:51918216..51918243
-
Hg19::chr6:51952328..51952343-p3@PKHD1
Hg19::chr6:51952347..51952366-第2页@PKHD1
Hg19::chr6:51952367..51952416-p1@PKHD1
Hg19::chr6:51952418..51952428-p4@PKHD1
Hg19::chr7:151776079..151776083+第16页@GALNT11
Hg19::chr7:601516..601525+p1@ENST00000453149
Hg19::chr7:78986665..78986704-电话:chr7:78986665..78986704
-
Hg19::chr8:30309846..30309857+电话:chr8:30309846..30309857
+
Hg19::chr8:58055232..58055235+第5页@ENST00000519314
Hg19::chr9:104231579..104231583+p2@ENST00000431507
Hg19::chrX:49832271..49832282+第8页@CLCN5


此共表达簇上的丰富路径<b>摘要:典型路径基因集是从Reactome、Wikipathys和KEGG中编译而来的。对于主要的信号通路,转录调控基因(下游靶点)是从Netpath获得的。综合起来,典型途径和下游靶点总计489个人类基因集。利用同源基因数据库通过同源性推断出相应的小家鼠基因集。通过超几何概率评估共表达簇中包含的每个典型489条路径和基因集的富集情况。然后,采用Benjamini-Hochberg方法对所得P值进行调整,以进行多重比较<br><b>分析师:Emmanuel Dimont链接到源数据集数据


此共表达无结果

此共表达簇上的丰富基因本体术语<b>摘要:共表达簇的GOStat分析结果。使用GOStat(PMID:14962934)和默认参数对启动子映射到至少两个不同基因的每个簇进行分析<br><b>分析师:Erik Arner链接到源数据集数据


GO标识GO名称FDR校正的p值
去:0007588排泄4.69476442232949e-05
GO:0044459号质膜部分0.000369429091675413
GO:0044425号膜部件0.000491070884924165
电话:0031226质膜固有的0.000743698624798823
GO:0016020编号薄膜0.00167739726344641
去:0046903分泌物0.00251565466945001
GO:0016021编号与膜集成0.00251565466945001
转到:0005887与质膜成一体0.00251565466945001
去:0031224膜固有的0.00251565466945001
去:0032501多细胞生物过程0.0027725832037263
GO:0012505号内膜系统0.00302972197827191
去:0031090细胞器膜0.00459785562354463
去:0005886质膜0.00967451780968439
去:0005737细胞质0.0108855830699133
GO:0044464号电池部件0.0114132230029425
GO:0016439号tRNA-假尿苷合成酶活性0.0152417009374672
去:0009982假尿苷合成酶活性0.0180476872763543
去:0005247电压门控氯离子通道活性0.0199239795702984
去:0003008系统进程0.0204564771126168
GO:0022844号电压门控阴离子通道活性0.0204708225188006
转到:0004195肾素活性0.0204708225188006
GO:0019310号肌醇分解代谢过程0.0204708225188006
GO:0050113编号肌醇加氧酶活性0.0204708225188006
电话:0044463细胞投影部分0.0206159692822967
GO:0051179号本地化0.0207262091043669
GO:0022857号跨膜转运蛋白活性0.0207262091043669
去:0009897质膜外侧0.0207262091043669
去:0008509阴离子跨膜转运蛋白活性0.0212055471294034
GO:0044424号细胞外0.0223612507441932
GO:0044444号细胞质部分0.0223612507441932
去:0031404氯离子结合0.0223612507441932
GO:0043168号阴离子配位0.0223612507441932
GO:0043565号序列特异性DNA结合0.0223612507441932
GO:0022892号底物特异性转运体活性0.0223612507441932
去:0031233质膜外侧固有0.0223612507441932
GO:0002003编号血管紧张素成熟0.0223612507441932
GO:0016899号氧化还原酶活性,作用于供体CH-OH组,氧作为受体0.0223612507441932
电话:0031362锚定在质膜外侧0.0223612507441932
去:0003973(S) -2-羟基酸氧化酶活性0.0223612507441932
GO:0060177号血管紧张素代谢过程的调节0.0223612507441932
GO:0002编号血液中血管紧张素水平的调节0.0223612507441932
GO:0015075号离子跨膜转运活性0.0223612507441932
去:0051234建立本地化0.0223612507441932
GO:0043229号细胞内细胞器0.0223612507441932
转到:0043226细胞器0.0223612507441932
GO:0016866号分子内转移酶活性0.0223612507441932
GO:0015698号无机阴离子转运0.0235319780175291
GO:0065008号生物质量调节0.0261309910929981
GO:0016758号转移己糖基团的转移酶活性0.0261309910929981
GO:0047961号甘氨酸N-酰基转移酶活性0.0261309910929981
GO:0001758号视网膜脱氢酶活性0.0261309910929981
GO:0001991号循环肾素-血管紧张素对体动脉血压的调节0.0261309910929981
转到:0031232外源性到质膜外侧0.0261309910929981
去:0050682AF-2域绑定0.0261309910929981
去:0005254氯离子通道活性0.0270199451283884
去:0005496类固醇结合0.0281266315934844
GO:0044440号内体部分0.0281266315934844
GO:001008号内体膜0.0281266315934844
去:0006821氯化物运输0.0282822587475936
GO:0001561号脂肪酸α-氧化0.030349766851108
去:0003081肾素-血管紧张素对体动脉血压的调节0.030349766851108
GO:0022891号底物特异性跨膜转运蛋白活性0.030349766851108
GO:0043231号细胞内膜结合细胞器0.030349766851108
GO:0043227号膜结合细胞器0.030349766851108
GO:0022832号电压门控通道活性0.030349766851108
去:0005244电压门控离子通道活性0.030349766851108
转到:0006820阴离子运输0.030349766851108
去:0005253阴离子通道活性0.0321985993264693
GO:0015321号钠依赖性磷酸跨膜转运蛋白活性0.0323765415667876
GO:0046716号肌肉保养0.0323765415667876
GO:0015889号钴胺素转运0.0323765415667876
去:0005932基底体0.0323765415667876
去:0005624膜分数0.0323765415667876
GO:0022838号底物特异性通道活性0.0329349463092681
GO:0022803号被动跨膜转运活性0.0335606986987906
GO:0015267号通道活动0.0335606986987906
去:0006810运输0.0356531845066796
去:00040283-氯丙烯醛脱氢酶活性0.0356531845066796
GO:0016234号包裹体0.0356531845066796
转到:0000139高尔基体膜0.0356531845066796
去:0003707类固醇激素受体0.0366536216945416
去:0007350胚层分割0.038657912761358
去:0000578胚胎轴规格0.038657912761358
去:0008595胚胎前后轴的测定0.038657912761358
去:0007351三分区域划分0.038657912761358
去:0050886内分泌过程0.0421737357853155
GO:0015250号水道活动0.0421737357853155
去:0004500多巴胺β-单加氧酶活性0.0421737357853155
GO:0001990号激素对体动脉血压的调节0.0421737357853155
去:0008194UDP-糖基转移酶活性0.0448993015915283
GO:0044431号高尔基器械部分0.0448993015915283
GO:0043154号caspase活性的负调控0.0448993015915283
转到:0031419钴胺素结合0.0448993015915283
去:0031526刷状边界膜0.0448993015915283
去:0009986电池表面0.0488243607667879
GO:0015101号有机阳离子跨膜转运活性0.0488243607667879
GO:0016757号转移糖基的转移酶活性0.0490788170595549
去:0006066酒精代谢过程0.0490788170595549
去:0004879配体依赖性核受体活性0.0490788170595549
去:0005372水转运活性0.0490788170595549
去:0004499含黄素单加氧酶活性0.0490788170595549
GO:0016715号氧化还原酶活性,作用于成对供体,结合或还原分子氧,还原的抗坏血酸盐作为一个供体,结合一个氧原子0.0490788170595549
去:0031253细胞投射膜0.0490788170595549
去:0009948前后轴规格0.0490788170595549
去:0008301DNA弯曲活性0.0490788170595549



此共同表达集群上的丰富示例本体术语<b>摘要:</b>为了总结1000个样本中的启动子活性(TSS区域的表达谱),我们基于FANTOM5样本本体(FF本体)进行了富集分析。这里的问题是“在哪种类型的样本中启动子更活跃”。为了回答这个问题,我们使用Mann-Whitney秩和检验比较了与样本本体术语相关的样本和其余样本中的表达式(TPM)。为了总结在这个共表达集群中丰富的本体,我们对组成的所有启动子的平均表达谱进行了相同的分析<b> 分析师:Hideya Kawaji链接到源数据集uberon_data(超级数据)<br><br>


优步解剖
本体术语p值n个
2.63e-11页26
肾间质2.63e-11页26
上尿路2.63e-11页26
肾原基2.63e-11页26
肾野2.63e-11页26
空泡复合器官1.15e-09年31
泌尿系统结构9.72e-07号47


此共表达簇上过度表达的TFBS(DNA)基序<b>摘要:</b>显示的值是该共表达簇中基序过度表达的p值。因此,较小的p值意味着强烈的过度代表性<b> 分析师:Michiel de Hoon链接到源数据数据<br><br>茉莉花图案<br>数据


新颖的图案



JASPAR图案

Motifs公司-log10(p值)
MA0003.1号机组2.52553e-08
MA0004.1号机组0.00641363
MA0006.1号机组0.108418
MA0007.1号机组0.00477566
MA0009.1号机组4.61854
MA0014.1号4.00043e-05
MA0017.1号1.71956
MA0019.1号0.227824
MA0024.1号机组1.01968
MA0025.1号文件0.414602
MA0027.1号机组1.383
MA0028.1号机组0.00181467
MA0029.1号机组0.176856
MA0030.1型0.167052
MA0031.1号文件0.117328
电话0038.10.487726
MA0040.1型0.719475
MA0041.1号0.426593
MA0042.1号1.82586
MA0043.1号0.0746449
MA0046.1号13.6057
MA0048.1号0.000287453
马0050.10.0542433
MA0051.1号0.00389865
MA0052.1号0.414363
MA0055.1号0.0779123
马0056.10
MA0057.1号0.0158055
MA0058.1号0.00519371
MA0059.1号0.0819979
马0060.10.281164
MA0061.1号0.00325132
MA0063.1号0
MA0066.1号0.165111
MA0067.1号0.239708
MA0068.1号0.344312
马0069.12.44349
MA0070.1号0.501599
MA0071.1号0.119274
MA0072.1号0.849675
MA0073.1号5.72665e-05
MA0074.1号0.473278
MA0076.1号0.000177025
MA0077.1号0.479566
MA0078.1号0.310235
MA0081.1号0.0400093
MA0083.1号0.266732
MA0084.1号1.73182
MA0087.1号0.843012
MA0088.1号0.109502
马0089.10
MA0090.1号2.34826
MA0091.1号机组0.23794
MA0092.1号1.32815
MA0093.1号0.00131127
马0095.10
马0098.10
MA0100.1型0.00488887
MA0101.1号机组0.0340037
MA0103.1号2.02157
MA0105.1号0.000207242
MA0106.1号0.614899
MA0107.1号0.00660217
MA0108.2号0.514899
MA0109.1号0
MA0111.1号0.529424
MA0113.1号0.957457
MA0114.1号2.23392
MA0115.1号0.19201
MA0116.1号0.451927
MA0117.1号0.0891848
马0119.11.80477
MA0122.1号机组2.24388
MA0124.1号机组0.50249
MA0125.1号机组1.85521
MA0130.1号机组0
马0131.10.3434
MA0132.1号机组0
MA0133.1号机组0
MA0135.1号机组4.89139
MA0136.1号机组0.0784355
MA0139.1号0.000237655
MA0140.1号机组0.373725
MA0141.1号1.96353
MA0142.1号0.45217
MA0143.1号0.958224
MA0144.1号机组0.0201057
MA0145.1号2.02058
MA0146.1号0.0032139
MA0147.1号0.00086697
MA0148.1号0.0821333
MA0149.1号0.106602
MA0062.2号19656年9月15日-05日
MA0035.2号0.799364
MA0039.2号2.27868e-08号
MA0138.2号机组0.0119021
MA0002.2号机组0.311441
马0137.20.0449024
MA0104.2号1.80681e-05号
MA0047.2号0.364577
MA0112.2号0.00547496
MA0065.2号0.235895
MA0150.1号机组0.0245807
MA0151.1号0
MA0152.1号0.590353
MA0153.1号机组8.27688
MA0154.1号机组0.00737324
MA0155.1号0.0385852
MA0156.1号机组0.00783235
MA0157.1号0.967544
MA0158.1号0
MA0159.1号机组0.11308
MA0160.1号0.321257
MA0161.1号机组0
MA0162.1号机组1.73612e-08
MA0163.1号机组7.89361e-07号
MA0164.1号机组0.711194
MA0080.2号0.0048791
马0018.20.105512
MA0099.2号机组0.235906
MA0079.2号0
MA0102.2号机组0.401893
马0258.10.0552689
马0259.10.00112806
马0442.10



ENCODE TF ChIP-seq峰富集分析<b>摘要:</b>对于每个TF和每个共表达簇,使用Fisher精确检验将带有ENCODE TF ChIP信号的启动子数量与稳健集的其他启动子进行比较。Benjamini-Hochberg校正后,保留了ChIP显著富集(q<=0.05)的聚类<br><b>分析师:Erik Arner链接到源数据集数据


没有此群集的分析结果

共表达簇的相对表达<b>总结:</b>将共表达簇与FANTOM5样本进行比较,以获得相对表达<br><b>分析师:不适用<br><br>链接到数据源数据